#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CHEMISTRY/EnzymaticDigestion.h>
#include <OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h>
#include <OpenMS/FORMAT/IdXMLFile.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/SYSTEM/File.h>
#include <OpenMS/FORMAT/FileHandler.h>
#include <OpenMS/SYSTEM/StopWatch.h>
#include <OpenMS/METADATA/PeptideEvidence.h>
#include <algorithm>
Classes | |
struct | PeptideProteinMatchInformation |
struct | FoundProteinFunctor |
struct | SAValue< Index< StringSet< Peptide >, IndexWotd<> > > |
struct | EquivalenceClassAA_< T > |
Namespaces | |
seqan | |
Functions | |
template<bool enumerateA, bool enumerateB, typename TOnFoundFunctor , typename TTreeIteratorA , typename TIterPosA , typename TTreeIteratorB , typename TIterPosB , typename TErrors > | |
void | _approximateAminoAcidTreeSearch (TOnFoundFunctor &onFoundFunctor, TTreeIteratorA iterA, TIterPosA iterPosA, TTreeIteratorB iterB_, TIterPosB iterPosB, TErrors errorsLeft, TErrors classErrorsLeft) |
template<typename TEquivalenceTable > | |
bool | _charComparator (AminoAcid charA, AminoAcid charB, TEquivalenceTable equivalence) |
OpenMS / TOPP release 2.0.0 | Documentation generated on Tue Aug 25 2015 05:53:55 using doxygen 1.8.9.1 |