35 #ifndef OPENMS_FORMAT_FILETYPES_H
36 #define OPENMS_FORMAT_FILETYPES_H
107 static String typeToName(Type type);
110 static String typeToMZML(Type type);
113 static Type nameToType(
const String& name);
123 static std::map<Type, String> initializeMap_();
126 static std::map<Type, String> initializeMZMLMap_();
132 #endif //OPENMS_FORMAT_FILETYPES_H
Transformation description file (.trafoXML)
Definition: FileTypes.h:72
XSD schema format.
Definition: FileTypes.h:99
OpenMS consensus map format (.consensusXML)
Definition: FileTypes.h:68
MzML file (.mzML)
Definition: FileTypes.h:73
A more convenient string class.
Definition: String.h:57
TraML (HUPO PSI format) for transitions (.traML)
Definition: FileTypes.h:81
mzIdentML (HUPO PSI AnalysisXML followup format) (.mzid)
Definition: FileTypes.h:77
any XML format
Definition: FileTypes.h:97
specArray file (.peplist)
Definition: FileTypes.h:88
OpenMS parameters file with workflow information (.toppas)
Definition: FileTypes.h:71
MzXML file (.mzXML)
Definition: FileTypes.h:65
FASTA file (.fasta)
Definition: FileTypes.h:91
NIST spectra library file format (.msp)
Definition: FileTypes.h:82
qcML (will undergo standardisation maybe) (.qcml)
Definition: FileTypes.h:79
TPP pepXML file (.pepXML)
Definition: FileTypes.h:75
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Controlled Vocabulary format.
Definition: FileTypes.h:95
OpenMS parameters file (.ini)
Definition: FileTypes.h:70
MS2 file (.ms2)
Definition: FileTypes.h:74
Unknown file extension.
Definition: FileTypes.h:61
Centralizes the file types recognized by FileHandler.
Definition: FileTypes.h:54
NCBI binary blast db.
Definition: FileTypes.h:100
msInspect file (.tsv)
Definition: FileTypes.h:87
Mascot XML file format for peptide identifications (.xml)
Definition: FileTypes.h:84
XMass Analysis file (fid)
Definition: FileTypes.h:86
OMSSA XML file format for peptide identifications (.xml)
Definition: FileTypes.h:83
Mascot Generic Format (.mgf)
Definition: FileTypes.h:69
any text format, which has only loose definition of what it actually contains – thus it is usually h...
Definition: FileTypes.h:94
Percolator tab-delimited output (PSM level)
Definition: FileTypes.h:102
DTA2D file (.dta2d)
Definition: FileTypes.h:63
OpenMS feature file (.featureXML)
Definition: FileTypes.h:66
OpenMS identification format (.idXML)
Definition: FileTypes.h:67
enhanced comma separated files (RT, m/z, Intensity, [meta])
Definition: FileTypes.h:92
static const std::map< Type, String > name_of_types_
Maps the FileType::Type to the preferred extension.
Definition: FileTypes.h:117
MzData file (.mzData)
Definition: FileTypes.h:64
any HTML format
Definition: FileTypes.h:96
static const std::map< Type, String > name_of_MZMLtypes_
Maps the FileType::Type to the preferred mzML CV name.
Definition: FileTypes.h:120
DTA file (.dta)
Definition: FileTypes.h:62
Portable Network Graphics (.png)
Definition: FileTypes.h:85
SpectraST MRM List.
Definition: FileTypes.h:101
general comma separated files format (might also be tab or space separated!!!), data should be regula...
Definition: FileTypes.h:93
kroenik file (.kroenik)
Definition: FileTypes.h:90
Type
Actual file types enum.
Definition: FileTypes.h:59
hardkloer file (.hardkloer)
Definition: FileTypes.h:89
GelML (HUPO PSI format) (.gelML)
Definition: FileTypes.h:80
TPP protXML file (.protXML)
Definition: FileTypes.h:76
mzQuantML (HUPO PSI AnalysisXML followup format) (.mzq)
Definition: FileTypes.h:78
analysisXML format
Definition: FileTypes.h:98