filterIdentificationsByBestHits(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, bool strict=false) | IDFilter | static |
filterIdentificationsByBestNHits(const IdentificationType &identification, Size n, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
filterIdentificationsByBestNHits(MSExperiment< PeakT > &experiment, Size n) | IDFilter | inlinestatic |
filterIdentificationsByBestNToMHits(const IdentificationType &identification, Size n, Size m, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
filterIdentificationsByCharge(const PeptideIdentification &identification, Int charge, PeptideIdentification &filtered_identification) | IDFilter | static |
filterIdentificationsByDecoy(const IdentificationType &identification, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
filterIdentificationsByExclusionPeptides(const PeptideIdentification &identification, const std::set< String > &peptides, bool ignore_modifications, PeptideIdentification &filtered_identification) | IDFilter | static |
filterIdentificationsByLength(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, Size min_length, Size max_length=UINT_MAX) | IDFilter | static |
filterIdentificationsByMetaValueRange(const PeptideIdentification &identification, const String &key, double low, double high, bool missing=false) | IDFilter | static |
filterIdentificationsByMZ(const std::vector< PeptideIdentification > &identifications, double min_mz, double max_mz, std::vector< PeptideIdentification > &filtered_identifications) | IDFilter | static |
filterIdentificationsByMzError(const PeptideIdentification &identification, double mass_error, bool unit_ppm, PeptideIdentification &filtered_identification) | IDFilter | static |
filterIdentificationsByProteinAccessions(const PeptideIdentification &identification, const StringList &proteins, PeptideIdentification &filtered_identification) | IDFilter | static |
filterIdentificationsByProteinAccessions(const ProteinIdentification &identification, const StringList &proteins, ProteinIdentification &filtered_identification) | IDFilter | static |
filterIdentificationsByProteins(const PeptideIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, PeptideIdentification &filtered_identification, bool no_protein_identifiers=false) | IDFilter | static |
filterIdentificationsByProteins(const ProteinIdentification &identification, const std::vector< FASTAFile::FASTAEntry > &proteins, ProteinIdentification &filtered_identification) | IDFilter | static |
filterIdentificationsByProteins(MSExperiment< PeakT > &experiment, const std::vector< FASTAFile::FASTAEntry > &proteins) | IDFilter | inlinestatic |
filterIdentificationsByRT(const std::vector< PeptideIdentification > &identifications, double min_rt, double max_rt, std::vector< PeptideIdentification > &filtered_identifications) | IDFilter | static |
filterIdentificationsByRTFirstDimPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, double p_value=0.05) | IDFilter | static |
filterIdentificationsByRTPValues(const PeptideIdentification &identification, PeptideIdentification &filtered_identification, double p_value=0.05) | IDFilter | static |
filterIdentificationsByScore(const IdentificationType &identification, double threshold_score, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
filterIdentificationsByScores(MSExperiment< PeakT > &experiment, double peptide_threshold_score, double protein_threshold_score) | IDFilter | inlinestatic |
filterIdentificationsByThreshold(const IdentificationType &identification, double threshold_fraction, IdentificationType &filtered_identification) | IDFilter | inlinestatic |
filterIdentificationsByThresholds(MSExperiment< PeakT > &experiment, double peptide_threshold_fraction, double protein_threshold_fraction) | IDFilter | inlinestatic |
filterIdentificationsByVariableModifications(const PeptideIdentification &identification, const std::vector< String > &fixed_modifications, PeptideIdentification &filtered_identification) | IDFilter | static |
filterIdentificationsUnique(const PeptideIdentification &identification, PeptideIdentification &filtered_identification) | IDFilter | static |
getBestHit(const std::vector< IdentificationType > identifications, bool assume_sorted, PeptideHit &best_hit) | IDFilter | inlinestatic |
IDFilter() | IDFilter | |
removeUnreferencedPeptideHits(const ProteinIdentification &identification, std::vector< PeptideIdentification > &peptide_identifications, bool delete_unreferenced_peptide_hits=false) | IDFilter | static |
removeUnreferencedProteinHits(const ProteinIdentification &identification, const std::vector< PeptideIdentification > &peptide_identifications, ProteinIdentification &filtered_identification) | IDFilter | static |
updateProteinGroups(const std::vector< ProteinIdentification::ProteinGroup > &groups, const std::vector< ProteinHit > &hits, std::vector< ProteinIdentification::ProteinGroup > &filtered_groups) | IDFilter | static |
~IDFilter() | IDFilter | virtual |