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ChromatogramExtractor Member List

This is the complete list of members for ChromatogramExtractor, including all inherited members.

CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
endProgress() const ProgressLogger
extract_value_bartlett(const SpectrumT &input, const double &mz, Size &peak_idx, double &integrated_intensity, const double &extract_window, const bool ppm)ChromatogramExtractorinline
extract_value_tophat(const SpectrumT &input, const double &mz, Size &peak_idx, double &integrated_intensity, const double &extract_window, const bool ppm)ChromatogramExtractorinline
extractChromatograms(const ExperimentT &input, ExperimentT &output, OpenMS::TargetedExperiment &transition_exp, double mz_extraction_window, bool ppm, TransformationDescription trafo, double rt_extraction_window, String filter)ChromatogramExtractorinline
extractChromatograms(const OpenSwath::SpectrumAccessPtr input, std::vector< OpenSwath::ChromatogramPtr > &output, std::vector< ExtractionCoordinates > extraction_coordinates, double mz_extraction_window, bool ppm, String filter)ChromatogramExtractorinline
ExtractionCoordinates typedefChromatogramExtractor
getFilterNr_(String filter)ChromatogramExtractorprivate
getLogType() const ProgressLogger
GUI enum valueProgressLogger
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
outsideExtractionWindow_(const ReactionMonitoringTransition &transition, double current_rt, const TransformationDescription &trafo, double rt_extraction_window)ChromatogramExtractorprivate
PeptideRTMap_ChromatogramExtractorprivate
populatePeptideRTMap_(OpenMS::TargetedExperiment &transition_exp, double rt_extraction_window)ChromatogramExtractorprivate
prepare_coordinates(std::vector< OpenSwath::ChromatogramPtr > &output_chromatograms, std::vector< ExtractionCoordinates > &coordinates, OpenMS::TargetedExperiment &transition_exp, const double rt_extraction_window, const bool ms1) const ChromatogramExtractor
prepareSpectra_(SpectrumSettingsT &settings, std::vector< ChromatogramT > &chromatograms, OpenMS::TargetedExperiment &transition_exp)ChromatogramExtractorinlineprivate
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
return_chromatogram(std::vector< OpenSwath::ChromatogramPtr > &chromatograms, std::vector< ChromatogramExtractor::ExtractionCoordinates > &coordinates, TransitionExpT &transition_exp_used, SpectrumSettings settings, std::vector< OpenMS::MSChromatogram<> > &output_chromatograms, bool ms1)ChromatogramExtractorinlinestatic
setLogType(LogType type) const ProgressLogger
setProgress(SignedSize value) const ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
type_ProgressLoggermutableprotected
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 2.0.0 Documentation generated on Tue Aug 25 2015 05:53:58 using doxygen 1.8.9.1