Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
MultiplexFilteringProfile Member List

This is the complete list of members for MultiplexFilteringProfile, including all inherited members.

averagine_similarity_MultiplexFilteringprotected
averagine_similarity_scaling_MultiplexFilteringprotected
averagineSimilarityFilter(MultiplexPeakPattern pattern, const std::vector< double > &intensities_actual, int peaks_found_in_all_peptides_spline, double mz) const MultiplexFilteringprotected
blacklist_MultiplexFilteringprotected
blacklistPeaks(MultiplexPeakPattern pattern, int spectrum, const std::vector< int > &mz_shifts_actual_indices, int peaks_found_in_all_peptides_spline)MultiplexFilteringprotected
boundaries_MultiplexFilteringProfileprivate
CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
endProgress() const ProgressLogger
exp_picked_MultiplexFilteringprotected
exp_profile_MultiplexFilteringProfileprivate
filter()MultiplexFilteringProfile
getAveragineSimilarity(std::vector< double > pattern, double m) const MultiplexFilteringprotected
getLogType() const ProgressLogger
getPatternSimilarity(std::vector< double > pattern1, std::vector< double > pattern2) const MultiplexFilteringprotected
getPeakIndex(int spectrum_index, double mz, double scaling) const MultiplexFilteringProfileprivate
OpenMS::MultiplexFiltering::getPeakIndex(std::vector< double > peak_position, int start, double mz, double scaling) const MultiplexFilteringprotected
GUI enum valueProgressLogger
intensity_cutoff_MultiplexFilteringprotected
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
missing_peaks_MultiplexFilteringprotected
monoIsotopicPeakIntensityFilter(MultiplexPeakPattern pattern, int spectrum_index, const std::vector< int > &mz_shifts_actual_indices) const MultiplexFilteringprotected
MultiplexFiltering(const MSExperiment< Peak1D > &exp_picked, const std::vector< MultiplexPeakPattern > patterns, int peaks_per_peptide_min, int peaks_per_peptide_max, bool missing_peaks, double intensity_cutoff, double mz_tolerance, bool mz_tolerance_unit, double peptide_similarity, double averagine_similarity, double averagine_similarity_scaling)MultiplexFiltering
MultiplexFilteringProfile(const MSExperiment< Peak1D > &exp_profile, const MSExperiment< Peak1D > &exp_picked, const std::vector< std::vector< PeakPickerHiRes::PeakBoundary > > &boundaries, const std::vector< MultiplexPeakPattern > patterns, int peaks_per_peptide_min, int peaks_per_peptide_max, bool missing_peaks, double intensity_cutoff, double mz_tolerance, bool mz_tolerance_unit, double peptide_similarity, double averagine_similarity, double averagine_similarity_scaling)MultiplexFilteringProfile
mz_tolerance_MultiplexFilteringprotected
mz_tolerance_unit_MultiplexFilteringprotected
NONE enum valueProgressLogger
nonLocalIntensityFilter(MultiplexPeakPattern pattern, const std::vector< double > &mz_shifts_actual, const std::vector< int > &mz_shifts_actual_indices, SplineSpectrum::Navigator nav, std::vector< double > &intensities_actual, int peaks_found_in_all_peptides, double mz) const MultiplexFilteringProfileprivate
operator=(const ProgressLogger &other)ProgressLogger
patterns_MultiplexFilteringprotected
peaks_per_peptide_max_MultiplexFilteringprotected
peaks_per_peptide_min_MultiplexFilteringprotected
peptide_similarity_MultiplexFilteringprotected
peptideSimilarityFilter(MultiplexPeakPattern pattern, const std::vector< double > &intensities_actual, int peaks_found_in_all_peptides_spline) const MultiplexFilteringprotected
positionsAndBlacklistFilter(MultiplexPeakPattern pattern, int spectrum, std::vector< double > peak_position, int peak, std::vector< double > &mz_shifts_actual, std::vector< int > &mz_shifts_actual_indices) const MultiplexFilteringprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
registry_MultiplexFilteringprotected
setLogType(LogType type) const ProgressLogger
setProgress(SignedSize value) const ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
type_ProgressLoggermutableprotected
zerothPeakFilter(MultiplexPeakPattern pattern, const std::vector< double > &intensities_actual) const MultiplexFilteringprotected
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 2.0.0 Documentation generated on Tue Aug 25 2015 05:54:04 using doxygen 1.8.9.1