class pdb.PdbSecondary

Available on all platforms

Secondary structure information written in pdb files. Available secondary structure names are listed in SecondaryType.hx.

Class Fields

static function readHelixFromText(text:String):PdbSecondary

read HELIX record from text and parse it.

static function readStrandFromText(text:String):PdbSecondary

read SHEET record from text and parse it.

Instance Fields

var chainid:String

chain id of this secondary structure

var init:Int

first index of this secondary structure

var last:Int

last index of this secondary structure

var sectype:Int

secondary structure type. See SecondaryType.hx for details.

function new(i:Int, l:Int, c:String, st:Int):Void

Constructor.

  • i: first residue index of this secondary structure
  • l: last residue index of this secondary structure
  • c: chain id of this secondary structure
  • st: secondary structure type

function get_chainid():String

getter of chainid

function get_init():Int

getter of init

function get_last():Int

getter of last

function get_sectype():Int

getter of sectype

function set_chainid(i:String):String

setter of chainid

function set_init(i:Int):Int

setter of init

function set_last(l:Int):Int

setter of last

function set_sectype(t:Int):Int

setter of sectype