package pdb
BackboneHB | Container for hydrogen bond energy between two residues. This only consider hydrogen bonds between backbone N-H and C=O. |
HBParams | Container for static variables for backbone hydrogen bond. Some of them come from STRIDE |
MyLine | |
Pdb | data container for pdb file |
PdbAtom | Container for ATOM or HETATM entry of pdb file. |
PdbChain | Container of a chain in pdb file |
PdbGridParams | Static data container used in generating grid. |
PdbModel | Container for a MODEL in pdb file. If there are no MODELs in pdb file, at least one MODEL exists and is used in this program. |
PdbResidue | Container of a residue in pdb file. Non-amino acid molecules such as waters, co-factors, lipids are considered as residues. |
PdbSecondary | Secondary structure information written in pdb files.
Available secondary structure names are listed in |
RamaAngle | Torsion angle |
RamaAngles | Container for phi and psi angles |
RamaParam | |
RamaParams | Pramaeters related with Ramachandran plot |
ResidueBase | base class for PDB residue (amino acids, water, lipids, ions, ...) |
SecondaryType | Static data container defining secondary structure type. |
WMHydrogenBond |