Interfaces and classes for protein structure (PDB).
Parse PDB files
To load a PDB file see the PDBFileReader class in the
IO subpackage.
The Structure object
The Structure object allows to access the PDB header information as well
as to the data from the ATOM records. The header information is currently available through the following objects:
The structure object provides access to the data from the ATOM records through
a hierarchy of sub-object:
Structure
|
Chain
|
Group
|
Atom
Other Features
For more documentation on how to work with the Structure API please
see
http://biojava.org/wiki/BioJava:CookBook#Protein_Structure